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zhangtaolab/DNALLM
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DNALLM Documentation
zhangtaolab/DNALLM
Introduction
Getting Started
Getting Started
Quick Start
Installation
User Guide
User Guide
Getting Started
Common Workflows
Best Practices
Performance Guide
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Tutorial
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Inference
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Basic Inference
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Configuration
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API
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Basenji2
Borzoi
DNABERT2
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GPN
LucaOne
megaDNA
MutBERT
Omni-DNA
SPACE
Datahandling
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Data
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Server
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Biology
Biology
DNA Sequences
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Sequence Analysis
Training
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MCP
Architecture
Architecture
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Technical Guides
Technical Guides
Transfer Learning
Fine-tuning Strategies
Evaluation Metrics
Performance Optimization
Resources
Resources
Model Zoo
Data Handling
Model Selection
Model Troubleshooting
Model Guides
Model Guides
BERT Models
Caduceus Models
ESM Models
Hyena Models
Llama Models
Mamba Models
EVO Models
Flash Attention Models
Special Models
Examples
Examples
Notebooks
Notebooks
Overview
Fine-Tuning
Fine-Tuning
Binary Classification
Multi-Label Classification
NER Fine-tuning
NER Data Generation
Custom Head
Generation
LoRA Fine-tuning
LoRA Inference
Inference
Inference
Basic Inference
EVO Models
MegaDNA Models
Sequence Generation
tRNA Inference
Analysis
Analysis
Mutagenesis
Interpretation
Embedding
Benchmarking
Benchmarking
Benchmark
Data Preparation
Data Preparation
Fine-tuning Data
Prediction Data Preparation
MCP Examples
MCP Examples
DNALLM MCP Client with LangChain Agents
Pydantic AI with Ollama and MCP Server
Marimo Demos
Marimo Demos
Fine-tuning Demo
Inference Demo
Benchmark Demo
FAQ
FAQ
Overview
Installation
Models
Benchmark
Fine-tuning
Data Processing
CLI
Inference
MCP
CLI Troubleshooting
¶
TBD
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